02 — Mini Project
Drug Discovery Against Mtb InhA
Comparative molecular docking on the InhA target
Comparative docking of isoniazid, pyridomycin and NITD-916 against the InhA therapeutic target.
01 — Problem
What this project set out to solve
InhA is a therapeutic target in Mycobacterium tuberculosis. The S94A mutation and its effect on isoniazid interactions were examined as part of understanding the target.
Comparing candidate inhibitors requires consistent structural evidence — docking affinity, interaction distances and drug-likeness parameters, rather than a single metric.
02 — Approach
How it was approached
Protein and ligand information was retrieved from PDB and PubChem; the target structure was prepared and the active site identified.
Molecular docking was performed and protein–ligand interactions analyzed using PyMOL.
Isoniazid, pyridomycin and NITD-916 were compared using docking affinity, interaction distances and SwissADME drug-likeness parameters.
Candidates were prioritized according to the project’s reported criteria.
03 — Workflow
Workflow & architecture
Docking workflow
- InhA targetM. tuberculosis
InhA was investigated as a therapeutic target in Mycobacterium tuberculosis, examining the S94A mutation and its effect on isoniazid interactions.
- StructuresPDB · PubChem
Protein and ligand information was retrieved from PDB and PubChem.
- Active sitePreparation
The target structure was prepared and the active site identified.
- Molecular dockingAutoDock
Molecular docking was performed for the candidate ligands.
- Interaction analysisPyMOL
Protein–ligand interactions were analyzed using PyMOL.
- Drug-likenessSwissADME
Isoniazid, pyridomycin and NITD-916 were compared using docking affinity, interaction distances and SwissADME drug-likeness parameters.
- PrioritisationNITD-916
NITD-916 was prioritized according to the project’s reported criteria.
Stage 01 / 07
InhA target
M. tuberculosis
InhA was investigated as a therapeutic target in Mycobacterium tuberculosis, examining the S94A mutation and its effect on isoniazid interactions.
- Data retrieval — target and ligand structures from PDB and PubChem.
- Preparation — target structure prepared and active site identified.
- Docking — molecular docking performed with AutoDock.
- Interaction analysis — protein–ligand interactions analyzed with PyMOL.
- Drug-likeness — SwissADME parameters across isoniazid, pyridomycin and NITD-916.
- Prioritisation — candidates ranked by the project’s reported criteria.
04 — Technologies
What it was built with
Data sources
Docking
Analysis
Drug-likeness
05 — Implementation
What was built
- Investigated InhA as a therapeutic target and examined the S94A mutation and its effect on isoniazid interactions.
- Retrieved protein and ligand information from PDB and PubChem, prepared the target and identified the active site.
- Performed molecular docking, then analyzed protein–ligand interactions using PyMOL, and compared the candidates on affinity, interaction distances and drug-likeness.
06 — Results
Results & output
Results and detailed analysis available in the project repository.
07 — Learnings
What it taught me
- A candidate ranking depends on combining docking affinity, interaction distances and drug-likeness rather than any single score.
- Consistent structural preparation matters before any docking comparison is meaningful.
- Standard public resources — PDB, PubChem, SwissADME — keep a docking study reproducible and shareable.