02Mini Project

Drug Discovery Against Mtb InhA

Comparative molecular docking on the InhA target

Comparative docking of isoniazid, pyridomycin and NITD-916 against the InhA therapeutic target.

Type
Mini Project
Target
Mtb InhA
Priority
NITD-916

What this project set out to solve

InhA is a therapeutic target in Mycobacterium tuberculosis. The S94A mutation and its effect on isoniazid interactions were examined as part of understanding the target.

Comparing candidate inhibitors requires consistent structural evidence — docking affinity, interaction distances and drug-likeness parameters, rather than a single metric.

How it was approached

Protein and ligand information was retrieved from PDB and PubChem; the target structure was prepared and the active site identified.

Molecular docking was performed and protein–ligand interactions analyzed using PyMOL.

Isoniazid, pyridomycin and NITD-916 were compared using docking affinity, interaction distances and SwissADME drug-likeness parameters.

Candidates were prioritized according to the project’s reported criteria.

Workflow & architecture

Docking workflow

  1. InhA targetM. tuberculosis

    InhA was investigated as a therapeutic target in Mycobacterium tuberculosis, examining the S94A mutation and its effect on isoniazid interactions.

  2. StructuresPDB · PubChem

    Protein and ligand information was retrieved from PDB and PubChem.

  3. Active sitePreparation

    The target structure was prepared and the active site identified.

  4. Molecular dockingAutoDock

    Molecular docking was performed for the candidate ligands.

  5. Interaction analysisPyMOL

    Protein–ligand interactions were analyzed using PyMOL.

  6. Drug-likenessSwissADME

    Isoniazid, pyridomycin and NITD-916 were compared using docking affinity, interaction distances and SwissADME drug-likeness parameters.

  7. PrioritisationNITD-916

    NITD-916 was prioritized according to the project’s reported criteria.

Stage 01 / 07

InhA target

M. tuberculosis

InhA was investigated as a therapeutic target in Mycobacterium tuberculosis, examining the S94A mutation and its effect on isoniazid interactions.

  • Data retrieval — target and ligand structures from PDB and PubChem.
  • Preparation — target structure prepared and active site identified.
  • Docking — molecular docking performed with AutoDock.
  • Interaction analysis — protein–ligand interactions analyzed with PyMOL.
  • Drug-likeness — SwissADME parameters across isoniazid, pyridomycin and NITD-916.
  • Prioritisation — candidates ranked by the project’s reported criteria.

What it was built with

Data sources

PDBPubChem

Docking

AutoDockMolecular docking

Analysis

PyMOLProtein–ligand interaction

Drug-likeness

SwissADME

What was built

  • Investigated InhA as a therapeutic target and examined the S94A mutation and its effect on isoniazid interactions.
  • Retrieved protein and ligand information from PDB and PubChem, prepared the target and identified the active site.
  • Performed molecular docking, then analyzed protein–ligand interactions using PyMOL, and compared the candidates on affinity, interaction distances and drug-likeness.

Results & output

Results and detailed analysis available in the project repository.

What it taught me

  • A candidate ranking depends on combining docking affinity, interaction distances and drug-likeness rather than any single score.
  • Consistent structural preparation matters before any docking comparison is meaningful.
  • Standard public resources — PDB, PubChem, SwissADME — keep a docking study reproducible and shareable.
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